Xin Wang

Xin works on probabilistic models to analyze high-dimensional phenotyping screens. In particular, he develops dynamic extension of Nested Effect Models.

Vita

since 10/2009
PhD student at Cambridge University working at the Cancer Research UK Cambridge Research Institute

2007-2009
Visiting Research Associate in Center for Computational Biology and Bioinformatics, Indiana University School of Medicine. Advisors: Dr. Yunlong Liu & Dr. Jeremy Sanford

2005-2008
M.Sc. in Pattern Recognition and Intelligent System, College of Automation, Harbin Engineering University. Advisor: Prof. Kejun Wang

2003-2005
Double major in Business Administration, College of Economics & Management, Harbin Engineering University

2002-2005
B.Sc. in Automation, College of Automation, Harbin Engineering University

2001-2002
Major in Mechanic Design, Manufacturing and its Automation, College of Mechanical Electrical Engineering, Harbin Engineering University, Harbin, China

Degrees

Pattern Recognition and Intelligent Systems: M.Sc.
Harbin Engineering University College of Automation

Business Administration: B.Sc.
Harbin Engineering University College of Economics & Management

Automation: B.Sc.
Harbin Engineering University College of Automation

Xin Wang

Xin Wang
CR UK - CRI
Li Ka Shing Centre
Robinson Way
Cambridge, CB2 0RE, UK
e: first.last@cancer.org.uk
p: +44 (0) 1223 40 4315

Funded by CRUK logo Affiliated with Cambridge University

Publications

Journal Papers and Peer Reviewed Proceedings

  1. Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford J, Liu Y: Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing. BMC genomics 2009, 10(S1):S4.
  2. Wang X, Teng M, Wang G, Zhao Y, Han X, Feng W, Li L, Sanford J, Liu Y, xIP-seq platform: an integrative framework for high-throughput sequencing data analysis. OCCBIO pp.26-31, 2009 Ohio Collaborative Conference on Bioinformatics, 2009
  3. Sanford J, Wang X, Mort M, VanDuyn N, Cooper D, Mooney S, Edenberg H, Liu Y: Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. Genome Research 2009, 19(3):381
  4. Sanford J, Coutinho P, Hackett J, Wang X, Ranahan W, Caceres J: Identification of nuclear and cytoplasmic mRNA targets for the shuttling protein SF2/ASF. PLoS ONE 2008, 3(10)
  5. Wang X, Wang K, Wang G, Sanford J, Liu Y: Model-based prediction of cis-acting RNA elements regulating tissue-specific alternative splicing. In: 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008, 10
  6. Wang G, Wang Y, Feng W, Wang X, Yang JY, Zhao Y, Wang Y, Liu Y: Transcription factor and microRNA regulation in androgen-dependent and -independent prostate cancer cells. BMC genomics 2008, 9 (S 2):S22
  7. Wang X, Wang G, Shen C, Li L, Mooney S, Edenberg H, Sanford J, Liu Y: Using RNase sequence specificity to refine the identification of RNA-protein binding regions. BMC genomics 2008, 9(S1):S17
  8. Wang G, Wang X, Wang Y, Yang J, Li L, Nephew K, Edenberg H, Zhou F, Liu Y: Identification of transcription factor and microRNA binding sites in responsible to fetal alcohol syndrome. BMC genomics 2008, 9(S1):S19

Conference Abstracts and Non-Peer Reviewed Proceedings

  1. Wang X, Li L, Sanford, J, Liu Y, Predicting sequence and structural specificities of RNA binding regions recognized by splicing factor SFRS1, Cold Spring Harbor Laboratory Meetings (2009)
  2. Wang X, Sanford, Liu Y, SplicingModeler: A computational model for cis-acting RNA element prediction, 16th Annual International Conference Intelligent Systems for Molecular Biology (2008)
  3. Sanford J, Wang X, Wang X, Liu Y, Mapping the in situ RNA binding specificity of the SR protein SF2/ASF using CLIP-Seq, Rustbelt RNA Meeting (2007)
  4. Wang X, Wang X G, Liu Y, Sanford J, Genome-wide analysis of in vivo RNA-protein interactions by cross-linking immunoprecipitation and pyrosequencing, Cold Spring Harbor Laboratory Meetings (2007)
  5. Wang X, Wang K, Campus Emergency Management System based on Scilab, Proceedings of International Workshop on Open Source SCILAB and Its Engineering Application (2006)