Software
Nested Effects Models
The R/Bioconductor package 'nem' reconstructs features of pathways from the nested structure of perturbation effects. It unites the software from several labs and represents the current state-of-the-art in Nested Effects Models.
DeregNet
Coming soon! R scripts to analyze the impact of copy-number alterations on gene expression and estimate deregulation between tumour sub-types.
The lab is a fan of R and contributes to Bioconductor.
